IL_7QIZ_115
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- GUGAAUC*GGGC
- Length
- 11 nucleotides
- Bulged bases
- 7QIZ|1|2|G|2527, 7QIZ|1|2|A|2529, 7QIZ|1|2|U|2530, 7QIZ|1|2|G|2589, 7QIZ|1|2|G|2590
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QIZ_115 not in the Motif Atlas
- Homologous match to IL_8C3A_106
- Geometric discrepancy: 0.3258
- The information below is about IL_8C3A_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74114.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
7QIZ|1|2|G|2525
7QIZ|1|2|U|2526
7QIZ|1|2|G|2527
7QIZ|1|2|A|2528
7QIZ|1|2|A|2529
7QIZ|1|2|U|2530
7QIZ|1|2|C|2531
*
7QIZ|1|2|G|2588
7QIZ|1|2|G|2589
7QIZ|1|2|G|2590
7QIZ|1|2|C|2591
Current chains
- Chain 2
- 25S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain D
- 60S ribosomal protein L8
- Chain J
- Ribosomal_L7Ae domain-containing protein
- Chain Z
- Ribosomal_L23eN domain-containing protein
Coloring options: