IL_7QIZ_119

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

AGA*U(OMC)U

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_119 not in the Motif Atlas

Geometric match to IL_5C5W_002

Geometric discrepancy: 0.1302

The information below is about IL_5C5W_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

7QIZ|1|2|A|2675
7QIZ|1|2|G|2676
7QIZ|1|2|A|2677
*
7QIZ|1|2|U|2685
7QIZ|1|2|OMC|2686
7QIZ|1|2|U|2687

Current chains

Chain 2

25S rRNA

Nearby chains

Chain 5

5S ribosomal RNA; 5S rRNA

Chain G

Ribosomal_L18_c domain-containing protein

Chain M

60S ribosomal protein uL5