IL_7QIZ_130

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GG(OMC)(PSU)C*G(PSU)G(A2M)G(OMC)U

Length

12 nucleotides

Bulged bases

7QIZ|1|2|G|2949, 7QIZ|1|2|G|2951

QA status

Modified nucleotides: OMC, PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QIZ|1|2|G|2881
7QIZ|1|2|G|2882
7QIZ|1|2|OMC|2883
7QIZ|1|2|PSU|2884
7QIZ|1|2|C|2885
*
7QIZ|1|2|G|2947
7QIZ|1|2|PSU|2948
7QIZ|1|2|G|2949
7QIZ|1|2|A2M|2950
7QIZ|1|2|G|2951
7QIZ|1|2|OMC|2952
7QIZ|1|2|U|2953

Current chains

Chain 2

25S rRNA

Nearby chains

Chain E

Ribosomal protein L3

Chain X

60S ribosomal protein uL14