IL_7QIZ_131

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

7QIZ|1|2|A|2945, 7QIZ|1|2|C|2946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_131 not in the Motif Atlas

Geometric match to IL_5TBW_109

Geometric discrepancy: 0.0697

The information below is about IL_5TBW_109

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

7QIZ|1|2|C|2885
7QIZ|1|2|U|2886
*
7QIZ|1|2|A|2944
7QIZ|1|2|A|2945
7QIZ|1|2|C|2946
7QIZ|1|2|G|2947

Current chains

Chain 2

25S rRNA

Nearby chains

Chain E

Ribosomal protein L3

Chain Q

Pectinesterase

Chain X

60S ribosomal protein uL14