IL_7QIZ_134

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

G(PSU)G*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_134 not in the Motif Atlas

Geometric match to IL_2W2H_002

Geometric discrepancy: 0.2799

The information below is about IL_2W2H_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_19557.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

7QIZ|1|2|G|2897
7QIZ|1|2|PSU|2898
7QIZ|1|2|G|2899
*
7QIZ|1|2|C|2910
7QIZ|1|2|A|2911
7QIZ|1|2|C|2912

Current chains

Chain 2

25S rRNA

Nearby chains

Chain K

60S ribosomal protein uL6

Chain o

Ubiquitin