IL_7QIZ_146

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UCCG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_146 not in the Motif Atlas

Geometric match to IL_4EYA_008

Geometric discrepancy: 0.3923

The information below is about IL_4EYA_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_65740.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

7QIZ|1|2|U|3165
7QIZ|1|2|C|3166
7QIZ|1|2|C|3167
7QIZ|1|2|G|3168
*
7QIZ|1|2|C|3274
7QIZ|1|2|G|3275
7QIZ|1|2|A|3276
7QIZ|1|2|G|3277

Current chains

Chain 2

25S rRNA

Nearby chains

Chain Q

Pectinesterase

Chain h

60S ribosomal protein eL33