IL_7QIZ_167

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CGAAG*CCGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_167 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.1364

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

7QIZ|1|8|C|124
7QIZ|1|8|G|125
7QIZ|1|8|A|126
7QIZ|1|8|A|127
7QIZ|1|8|G|128
*
7QIZ|1|8|C|137
7QIZ|1|8|C|138
7QIZ|1|8|G|139
7QIZ|1|8|A|140
7QIZ|1|8|G|141

Current chains

Chain 8

5.8S rRNA

Nearby chains

Chain 2

Large subunit ribosomal RNA; LSU rRNA

Chain Z

Ribosomal_L23eN domain-containing protein