IL_7QIZ_170

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

U(A2M)U*GUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_170 not in the Motif Atlas

Geometric match to IL_5TBW_110

Geometric discrepancy: 0.119

The information below is about IL_5TBW_110

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7QIZ|1|S2|U|27
7QIZ|1|S2|A2M|28
7QIZ|1|S2|U|29
*
7QIZ|1|S2|G|600
7QIZ|1|S2|U|601
7QIZ|1|S2|A|602

Current chains

Chain S2

18S

Nearby chains

Chain CA

40S body ribosomal protein uS12

Chain GA

40S body ribosomal protein uS4