IL_7QIZ_175
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- UGUAAG*CUG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QIZ_175 not in the Motif Atlas
- Geometric match to IL_4V88_389
- Geometric discrepancy: 0.1357
- The information below is about IL_4V88_389
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61299.2
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 3
Unit IDs
7QIZ|1|S2|U|58
7QIZ|1|S2|G|59
7QIZ|1|S2|U|60
7QIZ|1|S2|A|61
7QIZ|1|S2|A|62
7QIZ|1|S2|G|63
*
7QIZ|1|S2|C|88
7QIZ|1|S2|U|89
7QIZ|1|S2|G|90
Current chains
- Chain S2
- 18S
Nearby chains
- Chain FA
- 40S ribosomal protein S6
- Chain KA
- 40S ribosomal protein S24
- Chain w
- 40S ribosomal protein S4
Coloring options: