IL_7QIZ_183

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CA*UCG

Length

5 nucleotides

Bulged bases

7QIZ|1|S2|C|263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_183 not in the Motif Atlas

Geometric match to IL_1S03_002

Geometric discrepancy: 0.2897

The information below is about IL_1S03_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

61

Unit IDs

7QIZ|1|S2|C|202
7QIZ|1|S2|A|203
*
7QIZ|1|S2|U|262
7QIZ|1|S2|C|263
7QIZ|1|S2|G|264

Current chains

Chain S2

18S

Nearby chains

Chain w

40S ribosomal protein S4

Chain y

40S ribosomal protein S8