IL_7QIZ_191

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GGA*UAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_191 not in the Motif Atlas

Geometric match to IL_4V88_405

Geometric discrepancy: 0.0637

The information below is about IL_4V88_405

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

7QIZ|1|S2|G|393
7QIZ|1|S2|G|394
7QIZ|1|S2|A|395
*
7QIZ|1|S2|U|410
7QIZ|1|S2|A|411
7QIZ|1|S2|C|412

Current chains

Chain S2

18S

Nearby chains

Chain FA

40S ribosomal protein S6

Chain y

40S ribosomal protein S8