IL_7QIZ_192

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CAU*AAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_192 not in the Motif Atlas

Geometric match to IL_3NJ7_004

Geometric discrepancy: 0.1403

The information below is about IL_3NJ7_004

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

7QIZ|1|S2|C|415
7QIZ|1|S2|A|416
7QIZ|1|S2|U|417
*
7QIZ|1|S2|A|424
7QIZ|1|S2|A|425
7QIZ|1|S2|G|426

Current chains

Chain S2

18S

Nearby chains

Chain FA

40S ribosomal protein S6

Chain X

60S ribosomal protein uL14