IL_7QIZ_195

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GAG*CGAGG(A2M)UC

Length

11 nucleotides

Bulged bases

7QIZ|1|S2|G|542, 7QIZ|1|S2|G|543, 7QIZ|1|S2|U|545

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_195 not in the Motif Atlas

Homologous match to IL_8C3A_420

Geometric discrepancy: 0.174

The information below is about IL_8C3A_420

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14882.1

Basepair signature

cWW-tSH-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

7QIZ|1|S2|G|517
7QIZ|1|S2|A|518
7QIZ|1|S2|G|519
*
7QIZ|1|S2|C|539
7QIZ|1|S2|G|540
7QIZ|1|S2|A|541
7QIZ|1|S2|G|542
7QIZ|1|S2|G|543
7QIZ|1|S2|A2M|544
7QIZ|1|S2|U|545
7QIZ|1|S2|C|546

Current chains

Chain S2

18S

Nearby chains

Chain GA

40S body ribosomal protein uS4

Chain MA

40S ribosomal protein S30