IL_7QIZ_199

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

7QIZ|1|S2|U|561

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_199 not in the Motif Atlas

Geometric match to IL_4V88_407

Geometric discrepancy: 0.2136

The information below is about IL_4V88_407

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7QIZ|1|S2|G|560
7QIZ|1|S2|U|561
7QIZ|1|S2|C|562
*
7QIZ|1|S2|G|589
7QIZ|1|S2|C|590

Current chains

Chain S2

18S

Nearby chains

Chain GA

40S body ribosomal protein uS4

Chain MA

40S ribosomal protein S30

Chain NA

KH type-2 domain-containing protein