IL_7QIZ_201

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CAG*CCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_201 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.126

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

7QIZ|1|S2|C|617
7QIZ|1|S2|A|618
7QIZ|1|S2|G|619
*
7QIZ|1|S2|C|1108
7QIZ|1|S2|C|1109
7QIZ|1|S2|G|1110

Current chains

Chain S2

18S

Nearby chains

Chain CA

40S body ribosomal protein uS12

Chain EA

S5 DRBM domain-containing protein

Chain z

Ribosomal_S17_N domain-containing protein