IL_7QIZ_209

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_209 not in the Motif Atlas

Geometric match to IL_4V88_428

Geometric discrepancy: 0.085

The information below is about IL_4V88_428

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

7QIZ|1|S2|A|868
7QIZ|1|S2|G|869
*
7QIZ|1|S2|C|965
7QIZ|1|S2|A|966
7QIZ|1|S2|U|967
7QIZ|1|S2|U|968

Current chains

Chain S2

18S

Nearby chains

Chain HA

30S ribosomal protein S15, chloroplastic

Chain JA

40S ribosomal protein S15a-1

Chain LA

40S ribosomal protein S27