IL_7QIZ_210

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

7QIZ|1|S2|U|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_210 not in the Motif Atlas

Geometric match to IL_4V88_429

Geometric discrepancy: 0.0867

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

7QIZ|1|S2|G|870
7QIZ|1|S2|G|871
7QIZ|1|S2|A|872
7QIZ|1|S2|C|873
*
7QIZ|1|S2|G|960
7QIZ|1|S2|U|961
7QIZ|1|S2|U|962
7QIZ|1|S2|U|963
7QIZ|1|S2|U|964

Current chains

Chain S2

18S

Nearby chains

Chain HA

30S ribosomal protein S15, chloroplastic

Chain LA

40S ribosomal protein S27