IL_7QIZ_217

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GAC*G(OMU)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_217 not in the Motif Atlas

Geometric match to IL_4WF9_042

Geometric discrepancy: 0.1331

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

7QIZ|1|S2|G|997
7QIZ|1|S2|A|998
7QIZ|1|S2|C|999
*
7QIZ|1|S2|G|1011
7QIZ|1|S2|OMU|1012
7QIZ|1|S2|C|1013

Current chains

Chain S2

18S

Nearby chains

Chain 2

Large subunit ribosomal RNA; LSU rRNA

Chain DA

40S ribosomal protein S26

Chain IA

Ribosomal protein S14