IL_7QIZ_224

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CGGA*U(PSU)G

Length

7 nucleotides

Bulged bases

7QIZ|1|S2|G|1153

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_224 not in the Motif Atlas

Geometric match to IL_7A0S_044

Geometric discrepancy: 0.2487

The information below is about IL_7A0S_044

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7QIZ|1|S2|C|1151
7QIZ|1|S2|G|1152
7QIZ|1|S2|G|1153
7QIZ|1|S2|A|1154
*
7QIZ|1|S2|U|1633
7QIZ|1|S2|PSU|1634
7QIZ|1|S2|G|1635

Current chains

Chain S2

18S

Nearby chains

Chain DA

40S ribosomal protein S26

Chain EA

S5 DRBM domain-containing protein

Chain bA

mRNA