IL_7QIZ_227

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_227 not in the Motif Atlas

Geometric match to IL_4V88_445

Geometric discrepancy: 0.0921

The information below is about IL_4V88_445

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

7QIZ|1|S2|G|1181
7QIZ|1|S2|G|1182
*
7QIZ|1|S2|C|1464
7QIZ|1|S2|A|1465
7QIZ|1|S2|C|1466

Current chains

Chain S2

18S

Nearby chains

Chain QA

40S ribosomal protein uS19

Chain TA

40S ribosomal protein uS13

Chain aA

tRNA_1