IL_7QIZ_233
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- C(4AC)G*CA(OMG)G
- Length
- 7 nucleotides
- Bulged bases
- 7QIZ|1|S2|A|1432
- QA status
- Modified nucleotides: 4AC, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QIZ_233 not in the Motif Atlas
- Geometric match to IL_4X4N_005
- Geometric discrepancy: 0.1366
- The information below is about IL_4X4N_005
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
7QIZ|1|S2|C|1282
7QIZ|1|S2|4AC|1283
7QIZ|1|S2|G|1284
*
7QIZ|1|S2|C|1431
7QIZ|1|S2|A|1432
7QIZ|1|S2|OMG|1433
7QIZ|1|S2|G|1434
Current chains
- Chain S2
- 18S
Nearby chains
- Chain EA
- S5 DRBM domain-containing protein
- Chain NA
- KH type-2 domain-containing protein
- Chain RA
- 40S ribosomal protein uS9
- Chain VA
- Ribosomal_S10 domain-containing protein
- Chain XA
- 40S ribosomal protein uS14
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