IL_7QIZ_235

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_235 not in the Motif Atlas

Geometric match to IL_4V88_454

Geometric discrepancy: 0.1612

The information below is about IL_4V88_454

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

7QIZ|1|S2|C|1309
7QIZ|1|S2|U|1310
7QIZ|1|S2|G|1311
*
7QIZ|1|S2|C|1320
7QIZ|1|S2|G|1321

Current chains

Chain S2

18S

Nearby chains

Chain AA

40S ribosomal protein S17

Chain DA

40S ribosomal protein S26