IL_7QIZ_236
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- CUGC*GAG
- Length
- 7 nucleotides
- Bulged bases
- 7QIZ|1|S2|U|1343
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QIZ_236 not in the Motif Atlas
- Geometric match to IL_4V88_455
- Geometric discrepancy: 0.1098
- The information below is about IL_4V88_455
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
7QIZ|1|S2|C|1342
7QIZ|1|S2|U|1343
7QIZ|1|S2|G|1344
7QIZ|1|S2|C|1345
*
7QIZ|1|S2|G|1388
7QIZ|1|S2|A|1389
7QIZ|1|S2|G|1390
Current chains
- Chain S2
- 18S
Nearby chains
- Chain AA
- 40S ribosomal protein S17
- Chain RA
- 40S ribosomal protein uS9
- Chain VA
- Ribosomal_S10 domain-containing protein
- Chain YA
- Mitogen-activated protein kinase
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