IL_7QIZ_244

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_244 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.0903

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7QIZ|1|S2|G|1546
7QIZ|1|S2|G|1547
7QIZ|1|S2|G|1548
7QIZ|1|S2|A|1549
7QIZ|1|S2|U|1550
7QIZ|1|S2|A|1551
*
7QIZ|1|S2|U|1572
7QIZ|1|S2|U|1573
7QIZ|1|S2|C|1574
7QIZ|1|S2|A|1575
7QIZ|1|S2|A|1576
7QIZ|1|S2|C|1577

Current chains

Chain S2

18S

Nearby chains

Chain TA

40S ribosomal protein uS13

Chain UA

40S ribosomal protein eS19