IL_7QIZ_246
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- G(OMC)CC*GUA(6MZ)C
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMC, 6MZ
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QIZ_246 not in the Motif Atlas
- Homologous match to IL_8P9A_453
- Geometric discrepancy: 0.0725
- The information below is about IL_8P9A_453
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_25873.2
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7QIZ|1|S2|G|1644
7QIZ|1|S2|OMC|1645
7QIZ|1|S2|C|1646
7QIZ|1|S2|C|1647
*
7QIZ|1|S2|G|1768
7QIZ|1|S2|U|1769
7QIZ|1|S2|A|1770
7QIZ|1|S2|6MZ|1771
7QIZ|1|S2|C|1772
Current chains
- Chain S2
- 18S
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain aA
- tRNA_1
- Chain bA
- mRNA
- Chain t
- 60S ribosomal protein L41
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