IL_7QIZ_249

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CUAC*GA(A2M)G

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_249 not in the Motif Atlas

Geometric match to IL_6CZR_168

Geometric discrepancy: 0.2393

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

7QIZ|1|S2|C|1655
7QIZ|1|S2|U|1656
7QIZ|1|S2|A|1657
7QIZ|1|S2|C|1658
*
7QIZ|1|S2|G|1756
7QIZ|1|S2|A|1757
7QIZ|1|S2|A2M|1758
7QIZ|1|S2|G|1759

Current chains

Chain S2

18S

Nearby chains

Chain 2

Large subunit ribosomal RNA; LSU rRNA

Chain CA

40S body ribosomal protein uS12

Chain t

60S ribosomal protein L41