IL_7QIZ_252

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UCCG*CUUA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_252 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.1593

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7QIZ|1|S2|U|1670
7QIZ|1|S2|C|1671
7QIZ|1|S2|C|1672
7QIZ|1|S2|G|1673
*
7QIZ|1|S2|C|1742
7QIZ|1|S2|U|1743
7QIZ|1|S2|U|1744
7QIZ|1|S2|A|1745

Current chains

Chain S2

18S

Nearby chains

Chain 2

Large subunit ribosomal RNA; LSU rRNA

Chain X

60S ribosomal protein uL14

Chain y

40S ribosomal protein S8