IL_7QIZ_258

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GG*CUC

Length

5 nucleotides

Bulged bases

7QIZ|1|2|U|636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_258 not in the Motif Atlas

Geometric match to IL_6JQ6_006

Geometric discrepancy: 0.206

The information below is about IL_6JQ6_006

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

149

Unit IDs

7QIZ|1|2|G|430
7QIZ|1|2|G|431
*
7QIZ|1|2|C|635
7QIZ|1|2|U|636
7QIZ|1|2|C|637

Current chains

Chain 2

25S rRNA

Nearby chains

Chain g

60S ribosomal protein eL32

Chain h

60S ribosomal protein eL33