IL_7QIZ_262
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- CGGGUAA*(PSU)AAA(OMU)AG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU, OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7QIZ_262 not in the Motif Atlas
- Homologous match to IL_8P9A_266
- Geometric discrepancy: 0.1961
- The information below is about IL_8P9A_266
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_94128.1
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
7QIZ|1|2|C|1003
7QIZ|1|2|G|1004
7QIZ|1|2|G|1005
7QIZ|1|2|G|1006
7QIZ|1|2|U|1007
7QIZ|1|2|A|1008
7QIZ|1|2|A|1009
*
7QIZ|1|2|PSU|1064
7QIZ|1|2|A|1065
7QIZ|1|2|A|1066
7QIZ|1|2|A|1067
7QIZ|1|2|OMU|1068
7QIZ|1|2|A|1069
7QIZ|1|2|G|1070
Current chains
- Chain 2
- 25S rRNA
Nearby chains
- Chain 5
- 5S ribosomal RNA; 5S rRNA
- Chain G
- Ribosomal_L18_c domain-containing protein
- Chain I
- Thaliana 60S ribosomal protein L7
- Chain L
- 60S ribosomal protein L10
- Chain V
- 60S ribosomal protein eL21
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