IL_7QIZ_272

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GGAAG(PSU)CGG*CUGU(OMC)

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_272 not in the Motif Atlas

Homologous match to IL_8C3A_484

Geometric discrepancy: 0.159

The information below is about IL_8C3A_484

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.2

Basepair signature

cWW-cWW-L-cWW-L-R-L-R-L-L

Number of instances in this motif group

3

Unit IDs

7QIZ|1|2|G|1904
7QIZ|1|2|G|1905
7QIZ|1|2|A|1906
7QIZ|1|2|A|1907
7QIZ|1|2|G|1908
7QIZ|1|2|PSU|1909
7QIZ|1|2|C|1910
7QIZ|1|2|G|1911
7QIZ|1|2|G|1912
*
7QIZ|1|2|C|2336
7QIZ|1|2|U|2337
7QIZ|1|2|G|2338
7QIZ|1|2|U|2339
7QIZ|1|2|OMC|2340

Current chains

Chain 2

25S rRNA

Nearby chains

Chain E

Ribosomal protein L3

Chain X

60S ribosomal protein uL14