IL_7QIZ_289

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UACA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_289 not in the Motif Atlas

Geometric match to IL_8T29_001

Geometric discrepancy: 0.2825

The information below is about IL_8T29_001

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

7QIZ|1|S2|U|520
7QIZ|1|S2|A|521
7QIZ|1|S2|C|522
7QIZ|1|S2|A|523
*
7QIZ|1|S2|U|535
7QIZ|1|S2|U|536
7QIZ|1|S2|A|537
7QIZ|1|S2|A|538

Current chains

Chain S2

18S

Nearby chains

Chain GA

40S body ribosomal protein uS4

Chain KA

40S ribosomal protein S24