IL_7QIZ_291

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GA*UUU

Length

5 nucleotides

Bulged bases

7QIZ|1|S2|U|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_291 not in the Motif Atlas

Geometric match to IL_6UFH_004

Geometric discrepancy: 0.2414

The information below is about IL_6UFH_004

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

149

Unit IDs

7QIZ|1|S2|G|871
7QIZ|1|S2|A|872
*
7QIZ|1|S2|U|961
7QIZ|1|S2|U|962
7QIZ|1|S2|U|963

Current chains

Chain S2

18S

Nearby chains

Chain HA

30S ribosomal protein S15, chloroplastic

Chain LA

40S ribosomal protein S27