IL_7QIZ_293

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GGA*U(PSU)

Length

5 nucleotides

Bulged bases

7QIZ|1|S2|G|1153

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_293 not in the Motif Atlas

Homologous match to IL_8C3A_448

Geometric discrepancy: 0.3737

The information below is about IL_8C3A_448

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.11

Basepair signature

cWW-L-cWW

Number of instances in this motif group

46

Unit IDs

7QIZ|1|S2|G|1152
7QIZ|1|S2|G|1153
7QIZ|1|S2|A|1154
*
7QIZ|1|S2|U|1633
7QIZ|1|S2|PSU|1634

Current chains

Chain S2

18S

Nearby chains

Chain DA

40S ribosomal protein S26

Chain bA

mRNA