IL_7QIZ_294

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CC(PSU)*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_294 not in the Motif Atlas

Homologous match to IL_8P9A_432

Geometric discrepancy: 0.3329

The information below is about IL_8P9A_432

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

7QIZ|1|S2|C|1176
7QIZ|1|S2|C|1177
7QIZ|1|S2|PSU|1178
*
7QIZ|1|S2|G|1469
7QIZ|1|S2|C|1470
7QIZ|1|S2|G|1471

Current chains

Chain S2

18S

Nearby chains

Chain QA

40S ribosomal protein uS19

Chain RA

40S ribosomal protein uS9

Chain TA

40S ribosomal protein uS13

Chain UA

40S ribosomal protein eS19

Chain aA

tRNA_1