IL_7QIZ_298

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

(4AC)G*CA(OMG)

Length

5 nucleotides

Bulged bases

7QIZ|1|S2|A|1432

QA status

Modified nucleotides: 4AC, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QIZ_298 not in the Motif Atlas

Homologous match to IL_8C3A_458

Geometric discrepancy: 0.1397

The information below is about IL_8C3A_458

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

112

Unit IDs

7QIZ|1|S2|4AC|1283
7QIZ|1|S2|G|1284
*
7QIZ|1|S2|C|1431
7QIZ|1|S2|A|1432
7QIZ|1|S2|OMG|1433

Current chains

Chain S2

18S

Nearby chains

Chain EA

S5 DRBM domain-containing protein

Chain NA

KH type-2 domain-containing protein

Chain RA

40S ribosomal protein uS9

Chain VA

Ribosomal_S10 domain-containing protein

Chain XA

40S ribosomal protein uS14