IL_7QP6_009

3D structure

PDB id

7QP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 48S initiation complex in open state (h48S AUG open)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUU*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QP6_009 not in the Motif Atlas

Geometric match to IL_4TS2_004

Geometric discrepancy: 0.1411

The information below is about IL_4TS2_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

7QP6|1|A|G|108
7QP6|1|A|U|109
7QP6|1|A|U|110
*
7QP6|1|A|G|351
7QP6|1|A|U|352
7QP6|1|A|C|353

Current chains

Chain A

18S rRNA

Nearby chains

Chain B

40S ribosomal protein S11

Chain C

40S ribosomal protein S4, X isoform

Chain R

40S ribosomal protein S8