IL_7QP6_016

3D structure

PDB id

7QP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 48S initiation complex in open state (h48S AUG open)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QP6_016 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.2104

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

7QP6|1|A|C|188
7QP6|1|A|U|189
7QP6|1|A|G|190
7QP6|1|A|A|191
7QP6|1|A|C|192
*
7QP6|1|A|G|207
7QP6|1|A|G|208
7QP6|1|A|A|209
7QP6|1|A|U|210
7QP6|1|A|G|211

Current chains

Chain A

18S rRNA

Nearby chains

Chain R

40S ribosomal protein S8