IL_7QP6_022

3D structure

PDB id

7QP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 48S initiation complex in open state (h48S AUG open)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

7QP6|1|A|C|369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QP6_022 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.3722

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37738.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

7QP6|1|A|U|366
7QP6|1|A|U|367
7QP6|1|A|U|368
7QP6|1|A|C|369
7QP6|1|A|G|370
7QP6|1|A|A|371
*
7QP6|1|A|U|393
7QP6|1|A|G|394

Current chains

Chain A

18S rRNA

Nearby chains

Chain B

40S ribosomal protein S11

Chain R

40S ribosomal protein S8

Chain y

Eukaryotic translation initiation factor 3 subunit C