IL_7QP6_033

3D structure

PDB id

7QP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 48S initiation complex in open state (h48S AUG open)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

7QP6|1|A|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QP6_033 not in the Motif Atlas

Geometric match to IL_5TBW_093

Geometric discrepancy: 0.2489

The information below is about IL_5TBW_093

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7QP6|1|A|G|606
7QP6|1|A|U|607
7QP6|1|A|C|608
*
7QP6|1|A|G|635
7QP6|1|A|C|636

Current chains

Chain A

18S rRNA

Nearby chains

Chain 7

mRNA

Chain D

40S ribosomal protein S9

Chain F

40S ribosomal protein S30

Chain Z

40S ribosomal protein S3