IL_7QP6_037

3D structure

PDB id

7QP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 48S initiation complex in open state (h48S AUG open)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GCU*A(A2M)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QP6_037 not in the Motif Atlas

Geometric match to IL_1Z7F_002

Geometric discrepancy: 0.0854

The information below is about IL_1Z7F_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

7QP6|1|A|G|673
7QP6|1|A|C|674
7QP6|1|A|U|675
*
7QP6|1|A|A|1030
7QP6|1|A|A2M|1031
7QP6|1|A|C|1032

Current chains

Chain A

18S rRNA

Nearby chains

Chain I

40S ribosomal protein S13

Chain y

Eukaryotic translation initiation factor 3 subunit C