IL_7QP6_062

3D structure

PDB id

7QP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 48S initiation complex in open state (h48S AUG open)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGG*CACG

Length

7 nucleotides

Bulged bases

7QP6|1|A|A|1522

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QP6_062 not in the Motif Atlas

Geometric match to IL_7A0S_092

Geometric discrepancy: 0.3463

The information below is about IL_7A0S_092

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

7QP6|1|A|C|1234
7QP6|1|A|G|1235
7QP6|1|A|G|1236
*
7QP6|1|A|C|1521
7QP6|1|A|A|1522
7QP6|1|A|C|1523
7QP6|1|A|G|1524

Current chains

Chain A

18S rRNA

Nearby chains

Chain b

40S ribosomal protein S15

Chain f

40S ribosomal protein S18

Chain w

Transfer RNA; tRNA