IL_7QP6_072

3D structure

PDB id

7QP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 48S initiation complex in open state (h48S AUG open)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CUGG*C(5MC)G

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QP6_072 not in the Motif Atlas

Geometric match to IL_4WF9_003

Geometric discrepancy: 0.3134

The information below is about IL_4WF9_003

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_90351.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

7QP6|1|A|C|1363
7QP6|1|A|U|1364
7QP6|1|A|G|1365
7QP6|1|A|G|1366
*
7QP6|1|A|C|1373
7QP6|1|A|5MC|1374
7QP6|1|A|G|1375

Current chains

Chain A

18S rRNA

Nearby chains

Chain M

40S ribosomal protein S17

Chain N

40S ribosomal protein SA

Chain Q

40S ribosomal protein S26