IL_7QP6_099

3D structure

PDB id

7QP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 48S initiation complex in open state (h48S AUG open)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

7QP6|1|A|A|1522

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QP6_099 not in the Motif Atlas

Homologous match to IL_8P9A_433

Geometric discrepancy: 0.2672

The information below is about IL_8P9A_433

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

7QP6|1|A|G|1235
7QP6|1|A|G|1236
*
7QP6|1|A|C|1521
7QP6|1|A|A|1522
7QP6|1|A|C|1523

Current chains

Chain A

18S rRNA

Nearby chains

Chain b

40S ribosomal protein S15

Chain f

40S ribosomal protein S18

Chain w

Transfer RNA; tRNA