IL_7QP7_005

3D structure

PDB id

7QP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 48S initiation complex in closed state (h48S AUG closed)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAUUAAG*CGC

Length

10 nucleotides

Bulged bases

7QP7|1|A|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QP7_005 not in the Motif Atlas

Geometric match to IL_4V88_387

Geometric discrepancy: 0.1

The information below is about IL_4V88_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77761.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

7QP7|1|A|G|41
7QP7|1|A|A|42
7QP7|1|A|U|43
7QP7|1|A|U|44
7QP7|1|A|A|45
7QP7|1|A|A|46
7QP7|1|A|G|47
*
7QP7|1|A|C|479
7QP7|1|A|G|480
7QP7|1|A|C|481

Current chains

Chain A

18S rRNA

Nearby chains

Chain E

40S ribosomal protein S23