IL_7QP7_084

3D structure

PDB id

7QP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 48S initiation complex in closed state (h48S AUG closed)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

G(OMC)CC*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QP7_084 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1407

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7QP7|1|A|G|1702
7QP7|1|A|OMC|1703
7QP7|1|A|C|1704
7QP7|1|A|C|1705
*
7QP7|1|A|G|1829
7QP7|1|A|UR3|1830
7QP7|1|A|A|1831
7QP7|1|A|A|1832
7QP7|1|A|C|1833

Current chains

Chain A

18S rRNA

Nearby chains

Chain 7

mRNA

Chain 9

60S ribosomal protein L41

Chain w

Transfer RNA; tRNA