IL_7QQ3_016

3D structure

PDB id

7QQ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

7QQ3|1|I|G|801, 7QQ3|1|I|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QQ3_016 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.0639

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7QQ3|1|I|G|674
7QQ3|1|I|A|675
7QQ3|1|I|A|676
7QQ3|1|I|A|677
7QQ3|1|I|C|678
*
7QQ3|1|I|G|799
7QQ3|1|I|A|800
7QQ3|1|I|G|801
7QQ3|1|I|A|802
7QQ3|1|I|U|803
7QQ3|1|I|A|804
7QQ3|1|I|G|805
7QQ3|1|I|C|806

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4

Chain T

50S ribosomal protein L15