IL_7QQ3_053

3D structure

PDB id

7QQ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

7QQ3|1|I|U|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QQ3_053 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.0831

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7QQ3|1|I|G|1432
7QQ3|1|I|A|1433
7QQ3|1|I|A|1434
7QQ3|1|I|G|1435
*
7QQ3|1|I|C|1557
7QQ3|1|I|C|1558
7QQ3|1|I|U|1559
7QQ3|1|I|G|1560
7QQ3|1|I|C|1561

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2