IL_7QQ3_104

3D structure

PDB id

7QQ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QQ3_104 not in the Motif Atlas

Homologous match to IL_5J7L_346

Geometric discrepancy: 0.0645

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7QQ3|1|I|C|2652
7QQ3|1|I|U|2653
7QQ3|1|I|A|2654
7QQ3|1|I|G|2655
7QQ3|1|I|U|2656
7QQ3|1|I|A|2657
7QQ3|1|I|C|2658
*
7QQ3|1|I|G|2663
7QQ3|1|I|G|2664
7QQ3|1|I|A|2665
7QQ3|1|I|C|2666
7QQ3|1|I|C|2667
7QQ3|1|I|G|2668

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L6