IL_7QQ3_122

3D structure

PDB id

7QQ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QQ3_122 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0561

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7QQ3|1|I|U|1851
7QQ3|1|I|U|1852
7QQ3|1|I|A|1853
7QQ3|1|I|A|1854
7QQ3|1|I|U|1855
7QQ3|1|I|U|1856
7QQ3|1|I|G|1857
7QQ3|1|I|A|1858
7QQ3|1|I|U|1859
7QQ3|1|I|G|1860
*
7QQ3|1|I|U|1882
7QQ3|1|I|U|1883
7QQ3|1|I|G|1884
7QQ3|1|I|A|1885
7QQ3|1|I|U|1886
7QQ3|1|I|C|1887
7QQ3|1|I|G|1888
7QQ3|1|I|A|1889
7QQ3|1|I|A|1890
7QQ3|1|I|G|1891

Current chains

Chain I

23S ribosomal RNA

Nearby chains