IL_7QSH_001

3D structure

PDB id

7QSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

23S ribosomal RNA Sarcin Ricin Loop 27-nt fragment containing a Xanthosine residue at position 2648

Experimental method

X-RAY DIFFRACTION

Resolution

0.86 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QSH_001 not in the Motif Atlas

Geometric match to IL_4V9F_019

Geometric discrepancy: 0.1439

The information below is about IL_4V9F_019

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

7QSH|1|A|C|2652
7QSH|1|A|U|2653
7QSH|1|A|A|2654
7QSH|1|A|G|2655
7QSH|1|A|U|2656
7QSH|1|A|A|2657
7QSH|1|A|C|2658
*
7QSH|1|A|G|2663
7QSH|1|A|G|2664
7QSH|1|A|A|2665
7QSH|1|A|C|2666
7QSH|1|A|C|2667
7QSH|1|A|G|2668||A

Current chains

Chain A

23S ribosomal RNA Sarcin Ricin Loop 27-nucleotide fragment

Nearby chains